PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00023485001
Common NameGSBRNA2T00023485001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family RAV
Protein Properties Length: 327aa    MW: 36466.9 Da    PI: 10.0469
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00023485001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.65.5e-1258106155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa+ ++ a  +++g
  GSBRNA2T00023485001  58 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARSYDVAVHRFRG 106
                          89****9888.8*********3.....5**********99***********9998 PP

2B3101.25.9e-32168272199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f+k+ tpsdv+k++rlv+pk++ae++      ++++ +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v F++
  GSBRNA2T00023485001 168 FEKAVTPSDVGKLNRLVIPKHHAEKYfplppsSNVSVKGVLLNFEDVAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSR 257
                          89*************************99999778889***************************************************9 PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                          ++ ++++l++++ ++
  GSBRNA2T00023485001 258 SDGQDQQLYIGWKSR 272
                          877999999999776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-758106IPR001471AP2/ERF domain
CDDcd000181.13E-2458116No hitNo description
SuperFamilySSF541712.22E-1658115IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-1959115IPR001471AP2/ERF domain
SMARTSM003805.8E-2759120IPR001471AP2/ERF domain
PROSITE profilePS5103219.88859114IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.4E-40160275IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-31164274IPR015300DNA-binding pseudobarrel domain
CDDcd100173.10E-28167260No hitNo description
SMARTSM010191.4E-26168273IPR003340B3 DNA binding domain
PROSITE profilePS5086314.339168273IPR003340B3 DNA binding domain
PfamPF023623.3E-29168272IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MEVSSVDEST TSTCSIYETP AITPAKTSVN LHRMGSGSSV VLDAENGAEA ESRKLPSSKY  60
KGVVPQPNGR WGAQIYEKHQ RVWLGTFNEE DEAARSYDVA VHRFRGRDAV TNFKDARLDD  120
GEVEFLSSHS KSGIVDMLRK HTYSEELEQS KRRRNGNGNA VRSAVSLFEK AVTPSDVGKL  180
NRLVIPKHHA EKYFPLPPSS NVSVKGVLLN FEDVAGKVWR FRYSYWNSSQ SYVLTKGWSR  240
FVKEKNLRAG DVVSFSRSDG QDQQLYIGWK SRSGSDVETG RVLRLFGVNV SPAGSRNDVV  300
GNKRVVNDTE MLSLVCSKKR RIFHAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-7116427910124DNA-binding protein RAV1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.184470.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530750.0AK353075.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-20-J24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013711960.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9ZWM90.0RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A078J0250.0A0A078J025_BRANA; BnaCnng33070D protein
STRINGBra026917.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.10.0related to ABI3/VP1 1
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]